| Protein ZmBAF60_21 | |
|---|---|
|
ZmBAF60_21 is a protein in the SWI/SNF-BAF60 family.
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| Information | |
| Coreg Name: | ZmBAF60_21 |
| Species: | Maize |
| Coreg Family: | SWI/SNF-BAF60 |
| Gene Name(Synonym): | |
| Uniprot ID: | B6SIC9 |
| Subgenome: | 1 |
Protein ZmBAF60_21
ZmBAF60_21 is a protein in the SWI/SNF-BAF60 family.
| Overview of domains present in v5 transcripts | |
|---|---|
| PF02201 | |
| Zm00001eb231120_T001 |  |
Protein-DNA Interactions
Meme Logos for Maize v4 Gene IDs
| Gene ID | Type | MEME Logo | Sequence | FIMO | Position |
|---|---|---|---|---|---|
| Zm00001d015127 | DAPseq |  |
sequence | fimo | position |
| Zm00001d015127 | DAPseq |  |
sequence | fimo | position |
| Zm00001d015127 | ChIPseq |  |
sequence | fimo | position |
| Zm00001d015127 | PChIPseq |  |
sequence | fimo | position |
Interactions where ZmBAF60_21 is the regulator
Interactions where ZmBAF60_21 is the target
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Zm00001eb231120_T001 from maize genome v5
Amino Acid Sequence
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MARVFRGSLLLMSPAAAAAAAAAAGAKKAASTKPRAPAGITKPMPVSEAFRRFAGGAREVARSEAIKLVWTHIKAHGLQN
PSNKTEINCDATLKSLFGGRDKIGMMEVSKLLSPHFLKN
MARVFRGSLLLMSPAAAAAAAAAAGAKKAASTKPRAPAGITKPMPVSEAFRRFAGGAREVARSEAIKLVWTHIKAHGLQN
PSNKTEINCDATLKSLFGGRDKIGMMEVSKLLSPHFLKN
MARVFRGSLLLMSPAAAAAAAAAAGAKKAASTKPRAPAGITKPMPVSEAFRRFAGGAREVARSEAIKLVWTHIKAHGLQN
PSNKTEINCDATLKSLFGGRDKIGMMEVSKLLSPHFLKN
MARVFRGSLLLMSPAAAAAAAAAAGAKKAASTKPRAPAGITKPMPVSEAFRRFAGGAREVARSEAIKLVWTHIKAHGLQN
PSNKTEINCDATLKSLFGGRDKIGMMEVSKLLSPHFLKN
MARVFRGSLLLMSPAAAAAAAAAAGAKKAASTKPRAPAGITKPMPVSEAFRRFAGGAREVARSEAIKLVWTHIKAHGLQN
PSNKTEINCDATLKSLFGGRDKIGMMEVSKLLSPHFLKN
| Secondary Structure Color Code | |
|---|---|
| BEND | region with high backbone curvature without specific hydrogen bonding |
| HELX_LH_PP_P | left-handed polyproline helix |
| HELX_RH_3T_P | right-handed 3-10 helix |
| HELX_RH_AL_P | right-handed alpha helix |
| HELX_RH_PI_P | right-handed pi helix |
| STRN | beta strand |
| TURN_TY1_P | type I turn |
| UNDETERMINED | no data available |
| Domains Present | |
|---|---|
| PF02201 |
|
| Hover here to show all domains | |
Nucleotide Sequence
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TCCACTCTCATCCCCACTCAGGGCC...
TCCACTCTCATCCCCACTCAGGGCCCAAATACGAAAGGGACTTTTAAATCCGTGGCTCTAATCCGTAACCCTAAACCCCCACCAAAACCCCTCCTCGCCTCCCTCCCCTCCATCCAATCCTCGAAACGAGCGCGCGGGCGAGGAGGTCCCCCTCTCCGAGATGGCTAGGGTTTTTCGCGGGTCCCTCCTCCTGATGTCCCCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCAGGGGCCAAGAAGGCGGCCTCCACGAAGCCGAGGGCGCCGGCCGGGATCACGAAGCCGATGCCGGTCTCCGAAGCGTTCCGCAGGTTCGCCGGCGGCGCGCGCGAGGTCGCACGCTCCGAGGCCATCAAGCTCGTCTGGACCCACATCAAGGCCCACGGCCTCCAGAACCCGTCCAACAAAACCGAGATCAACTGTGACGCGACGCTCAAGAGCTTGTTTGGTGGGAGGGACAAGATCGGGATGATGGAGGTCTCGAAGCTACTGAGCCCTCACTTCCTGAAGAACTAGCAAGCGGTGCATGGAGCCGGCGGCAGCGCTTCGCGGTTGATTTGGGAAATGTTTAGTCTGCTAATGGCAAATCTCAGTCCACGTTCATCCCAGTCTTTGATTCGTGGTCTTAGCGTCATGTTCGTATGCGTGGGGTTGCGTTCTTTCCGATTTGTATAGTCGGTCTGCAGCATGTTATATGATATGCTTGAAGTTTGCACTCCTCCCTTGTCATCGCTGGATGCCTGGATAAACAAAA
GRMZM2G524937_T01 from maize genome v3
Amino Acid Sequence
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MARVFRGSLLLMSPAAAAAAAAAAGAKKAASTKPRAPAGITKPMPVSEAFRRFAGGAREVARSEAIKLVWTHIKAHGLQN
PSNKTEINCDATLKSLFGGRDKIGMMEVSKLLSPHFLKN
Nucleotide Sequence
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TCCACTCTCATCCCCACTCAGGGCC...
TCCACTCTCATCCCCACTCAGGGCCCAAATACGAAAGGGACTTTTAAATCCGTGGCTCTAATCCGTAACCCTAAACCCCCACCAAAACCCCTCCTCGCCTCCCTCCCCTCCATCCAATCCTCGAAACGAGCGCGCGGGCGAGGAGGTCCCCCTCTCCGAGATGGCTAGGGTTTTTCGCGGGTCCCTCCTCCTGATGTCCCCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCAGGGGCCAAGAAGGCGGCCTCCACGAAGCCGAGGGCGCCGGCCGGGATCACGAAGCCGATGCCGGTCTCCGAAGCGTTCCGCAGGTTCGCCGGCGGCGCGCGCGAGGTCGCACGCTCCGAGGCCATCAAGCTCGTCTGGACCCACATCAAGGCCCACGGCCTCCAGAACCCGTCCAACAAAACCGAGATCAACTGTGACGCGACGCTCAAGAGCTTGTTTGGTGGGAGGGACAAGATCGGGATGATGGAGGTCTCGAAGCTACTGAGCCCTCACTTCCTGAAGAACTAGCAAGCGGTGCATGGAGCCGGCGGCAGCGCTTCGCGGTTGATTTGGGAAATGTTTAGTCTGCTAATGGCAAATCTCAGTCCACGTTCATCCCAGTCTTTGATTCGTGGTCTTAGCGTCATGTTCGTATGCGTGGGGTTGCGTTCTTTCCGATTTGTATAGTCGGTCTGCAGCATGTTATATGATATGCTTGAAGTTTGCACTCCTCCCTTGTCATCGCTGGATGCCTGGATAAACAAAACCAGCTGTTGACTGACTTTGTAAGTTGTACCTCTGTTGCTTACGAAATATTACTTCCCTTCTCGAATATTTGTCGTCTGCTATTTCATTTTTCGAACTAAACCGCGACAAAAGAAAAAAAAGAACGGACGGAGTATTTATTATTAGCCAA
Zm00001d015127_T001 from maize genome v4
Amino Acid Sequence
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MARVFRGSLLLMSPAAAAAAAAAAGAKKAASTKPRAPAGITKPMPVSEAFRRFAGGAREVARSEAIKLVWTHIKAHGLQN
PSNKTEINCDATLKSLFGGRDKIGMMEVSKLLSPHFLKN
Nucleotide Sequence
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ATCCCCACTCAGGGCCCAAATACGA...
ATCCCCACTCAGGGCCCAAATACGAAAGGGACTTTTAAATCCGTGGCTCTAATCCGTAACCCTAAACCCCCACCAAAACCCCTCCTCGCCTCCCTCCCCTCCATCCAATCCTCGAAACGAGCGCGCGGGCGAGGAGGTCCCCCTCTCCGAGATGGCTAGGGTTTTTCGCGGGTCCCTCCTCCTGATGTCCCCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCAGGGGCCAAGAAGGCGGCCTCCACGAAGCCGAGGGCGCCGGCCGGGATCACGAAGCCGATGCCGGTCTCCGAAGCGTTCCGCAGGTTCGCCGGCGGCGCGCGCGAGGTCGCACGCTCCGAGGCCATCAAGCTCGTCTGGACCCACATCAAGGCCCACGGCCTCCAGAACCCGTCCAACAAAACCGAGATCAACTGTGACGCGACGCTCAAGAGCTTGTTTGGTGGGAGGGACAAGATCGGGATGATGGAGGTCTCGAAGCTACTGAGCCCTCACTTCCTGAAGAACTAGCAAGCGGTGCATGGAGCCGGCGGCAGCGCTTCGCGGTTGATTTGGGAAATGTTTAGTCTGCTAATGGCAAATCTCAGTCCACGTTCATCCCAGTCTTTGATTCGTGGTCTTAGCGTCATGTTCGTATGCGTGGGGTTGCGTTCTTTCCGATTTGTATAGTCGGTCTGCAGCATGTTATATGATATGCTTGAAGTTTGCACTCCTCCCTTGTCATCGCTGGATGCCTGGATAAACAAAACCAGCTGTTGACTGACTTTGTAAGTTGTACCTCTGTTGCTTACGAAATATTACTTCCCTTCTCGAATATTTGTCGTCTGCTATTTCATTTTTCGAACTAAACCGCGACAAAAGAAAAAAAAGAACGGACGGAGTATTTATTATTAGCCAA
Zm00001eb231130_T001 from maize genome v5
Amino Acid Sequence
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MVRATRGTWRPWALMWVQTSLMASERATSRAPPANLRNASETGIGFVIPAGALGFVEAAFLAPAAAAAAAAAAGDIRRRD
PRKTLAISERGTSSPARSFRGLDGGEGGEEGFWWGFRVTD
Nucleotide Sequence
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AGCGAGAGGCTCTAGAACCGATCGA...
AGCGAGAGGCTCTAGAACCGATCGAGAGGAGGAGGGAGGAGGAGGCCGTGGGCGAGCGGATGGTGAGAGCGACGCGCGGTACCTGGAGGCCGTGGGCCTTGATGTGGGTCCAGACGAGCTTGATGGCCTCGGAGCGTGCGACCTCGCGCGCGCCGCCGGCGAACCTGCGGAACGCTTCGGAGACCGGCATCGGCTTCGTGATCCCGGCCGGCGCCCTCGGCTTCGTGGAGGCCGCCTTCTTGGCCCCTGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGGGGACATCAGGAGGAGGGACCCGCGAAAAACCCTAGCCATCTCGGAGAGGGGGACCTCCTCGCCCGCGCGCTCGTTTCGAGGATTGGATGGAGGGGAGGGAGGCGAGGAGGGGTTTTGGTGGGGGTTTAGGGTTACGGATTAGAGCCACGGATTTAAAAGTCCCTTTCGTATTTGGGCCCTGAGTGGGGATGAGAGTGGAGGGAGAGAACGGAAGCAAAACTGGGGTTTTTACGTCTAGGACCTTGAACTTGCCTGGGTTTAGCACTAATTTCTTTCTGCAACTACAAGTCAGCAAGTGGGCTCATTTCCTTATTATTAAAGCAGAAAGGATTCTCGCT
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